{
  "_id": "6a1fe871b401979e7343d88b",
  "Package": "glydb",
  "Title": "Glycan Structure Database",
  "Version": "0.5.0",
  "Authors@R": "person(\"Bin\", \"Fu\", , \"23110220018@m.fudan.edu.cn\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8567-2997\"))",
  "Description": "Provides a comprehensive database of glycan structures\nfrom GlyTouCan, including fully determined glycan structures\nwith complete linkage, substituent, anomer, and monosaccharide\ninformation. This database serves as a foundational resource\nfor the glycoverse ecosystem, enabling glycan structure\nanalysis, comparison, and research applications.",
  "License": "MIT + file LICENSE",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "URL": "https://glycoverse.github.io/glydb/",
  "LazyData": "true",
  "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev libssl-dev",
  "Repository": "https://glycoverse.r-universe.dev",
  "Date/Publication": "2026-06-03 05:56:07 UTC",
  "RemoteUrl": "https://github.com/glycoverse/glydb",
  "RemoteRef": "v0.5.0",
  "RemoteSha": "47a2c7171c80e839e9786a791b26c15885238596",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 08:35:43 UTC",
    "User": "root"
  },
  "Author": "Bin Fu [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-8567-2997>)",
  "Maintainer": "Bin Fu <23110220018@m.fudan.edu.cn>",
  "MD5sum": "f280b2b38bcf547c3cac588f33544693",
  "_user": "glycoverse",
  "_type": "src",
  "_file": "glydb_0.5.0.tar.gz",
  "_fileid": "73976f0ea83a9a10c5d875d5b72a07b861019696ba1208a5963fc372b901e2b4",
  "_filesize": 956225,
  "_sha256": "73976f0ea83a9a10c5d875d5b72a07b861019696ba1208a5963fc372b901e2b4",
  "_created": "2026-06-03T08:35:43.000Z",
  "_published": "2026-06-03T08:40:17.758Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79254225734,
      "time": 170,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7379674048"
    },
    {
      "job": 79254225717,
      "time": 167,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7379673086"
    },
    {
      "job": 79254225918,
      "time": 134,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7379685510"
    },
    {
      "job": 79254225850,
      "time": 139,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7379692140"
    },
    {
      "job": 79253688983,
      "time": 192,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7379615737"
    },
    {
      "job": 79254225710,
      "time": 112,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7379654897"
    },
    {
      "job": 79254225798,
      "time": 203,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7379685076"
    },
    {
      "job": 79254225860,
      "time": 125,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7379659583"
    },
    {
      "job": 79254225833,
      "time": 123,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7379658868"
    }
  ],
  "_buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/glycoverse/glydb",
  "_commit": {
    "id": "47a2c7171c80e839e9786a791b26c15885238596",
    "author": "fubin1999 <65430559+fubin1999@users.noreply.github.com>",
    "committer": "fubin1999 <65430559+fubin1999@users.noreply.github.com>",
    "message": "chore: release version 0.5.0\n",
    "time": 1780466167
  },
  "_maintainer": {
    "name": "Bin Fu",
    "email": "23110220018@m.fudan.edu.cn",
    "orcid": "0000-0001-8567-2997"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "glyrepr",
      "version": ">= 0.10.0",
      "role": "Depends"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "glyparse",
      "role": "Imports"
    },
    {
      "package": "httr2",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "vctrs",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    }
  ],
  "_owner": "glycoverse",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-43",
      "n": 7
    },
    {
      "week": "2025-44",
      "n": 9
    },
    {
      "week": "2025-45",
      "n": 4
    },
    {
      "week": "2025-46",
      "n": 15
    },
    {
      "week": "2025-47",
      "n": 11
    },
    {
      "week": "2025-48",
      "n": 3
    },
    {
      "week": "2026-04",
      "n": 3
    },
    {
      "week": "2026-05",
      "n": 5
    },
    {
      "week": "2026-06",
      "n": 4
    },
    {
      "week": "2026-07",
      "n": 10
    },
    {
      "week": "2026-09",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 4
    },
    {
      "week": "2026-23",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2025-10-27"
    },
    {
      "name": "v0.1.1",
      "date": "2025-11-03"
    },
    {
      "name": "v0.2.0",
      "date": "2025-11-15"
    },
    {
      "name": "v0.2.1",
      "date": "2025-11-17"
    },
    {
      "name": "v0.3.0",
      "date": "2025-11-22"
    },
    {
      "name": "v0.3.1",
      "date": "2025-11-24"
    },
    {
      "name": "v0.3.2",
      "date": "2026-01-27"
    },
    {
      "name": "v0.3.3",
      "date": "2026-02-06"
    },
    {
      "name": "v0.4.0",
      "date": "2026-02-13"
    },
    {
      "name": "v0.4.1",
      "date": "2026-03-29"
    },
    {
      "name": "v0.5.0",
      "date": "2026-06-03"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "fubin1999",
      "count": 81,
      "uuid": 65430559
    }
  ],
  "_userbio": {
    "uuid": 188668119,
    "type": "organization",
    "name": "glycoverse",
    "description": "A modern glycomics and glycoproteomics data analysis framework in R."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/glydb"
  },
  "_devurl": "https://github.com/glycoverse/glydb",
  "_pkgdown": "https://glycoverse.github.io/glydb/",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/glydb.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "glydb_compositions",
    "glydb_species",
    "glydb_structures",
    "glytoucan_to_struc"
  ],
  "_datasets": [
    {
      "name": "glydb_data",
      "title": "Fully Determined GlyTouCan Glycan Data",
      "object": "glydb_data",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "glytoucan_ac",
        "glycan_structure",
        "glycan_composition",
        "species",
        "confidence",
        "glycan_type"
      ],
      "rows": 7125,
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "glydb_compositions",
      "title": "Get Compositions From Glydb Data",
      "topics": [
        "glydb_compositions"
      ]
    },
    {
      "page": "glydb_data",
      "title": "Fully Determined GlyTouCan Glycan Data",
      "topics": [
        "glydb_data"
      ]
    },
    {
      "page": "glydb_species",
      "title": "Get Supported Species From Glydb Data",
      "topics": [
        "glydb_species"
      ]
    },
    {
      "page": "glydb_structures",
      "title": "Get Structures From Glydb Data",
      "topics": [
        "glydb_structures"
      ]
    },
    {
      "page": "glytoucan_to_struc",
      "title": "Convert GlyTouCan Accessions to Glycan Structures",
      "topics": [
        "glytoucan_to_struc"
      ]
    }
  ],
  "_pkglogo": "https://github.com/glycoverse/glydb/raw/v0.5.0/man/figures/logo.png",
  "_readme": "https://github.com/glycoverse/glydb/raw/v0.5.0/README.md",
  "_rundeps": [
    "askpass",
    "backports",
    "checkmate",
    "cli",
    "codetools",
    "cpp11",
    "curl",
    "digest",
    "dplyr",
    "furrr",
    "future",
    "generics",
    "globals",
    "glue",
    "glyparse",
    "glyrepr",
    "httr2",
    "igraph",
    "lattice",
    "lifecycle",
    "listenv",
    "magrittr",
    "Matrix",
    "openssl",
    "parallelly",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "rstackdeque",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 3.322219294733919,
  "_indexed": true,
  "_nocasepkg": "glydb",
  "_universes": [
    "glycoverse"
  ],
  "_previous": "0.4.1",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.5.0",
      "date": "2026-06-03T08:37:59.000Z",
      "distro": "noble",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "2216bdfae7e547c2c1c0d24f1193c71cd3dfaa6f16064d519a9fed9545c7b751",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.5.0",
      "date": "2026-06-03T08:37:55.000Z",
      "distro": "noble",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "9a8d26ad8e303c730931cf0cae17c94f7ed4aa56285174b0777acf381441e25e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.5.0",
      "date": "2026-06-03T08:38:46.000Z",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "98a7168393bfbad438ce3d29f8382f06710302e8c83670a4cf992a7ee33742e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.5.0",
      "date": "2026-06-03T08:39:05.000Z",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "24289596f968a8f88f91c99de68476f1eb080534bd60dd91fedaa8fc09571404",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.5.0",
      "date": "2026-06-03T08:37:57.000Z",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "3213bcf3e4a4588cf32718c870ccfe09db8bdc9331d1028cfe5aca38079b020e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-03T08:38:09.000Z",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "cf88b474d7955c629cd5a1af00a435907e871dff5ae2037730fc322a90302b57",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-03T08:37:08.000Z",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "2bb8972a901c5cbc109429ff6c509f3792e03bc3d04d3813292d6108414e5f95",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-03T08:37:00.000Z",
      "commit": "47a2c7171c80e839e9786a791b26c15885238596",
      "fileid": "568214d6c2533ee6df452b7d5d11ee3f59043aa6973557e763899812d6a0c635",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26873228116"
    }
  ]
}