{
  "_id": "6ad1d9ff29625c14e47aebc8",
  "Package": "glydb",
  "Title": "Glycan Structure Database",
  "Version": "0.7.2",
  "Authors@R": "person(\"Bin\", \"Fu\", , \"23110220018@m.fudan.edu.cn\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8567-2997\"))",
  "Description": "Provides a comprehensive database of glycan structures\nfrom GlyTouCan, including fully determined glycan structures\nwith complete linkage, substituent, anomer, and monosaccharide\ninformation. This database serves as a foundational resource\nfor the glycoverse ecosystem, enabling glycan structure\nanalysis, comparison, and research applications.",
  "License": "MIT + file LICENSE",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "URL": "https://glycoverse.github.io/glydb/",
  "LazyData": "true",
  "LazyDataCompression": "bzip2",
  "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev",
  "Repository": "https://glycoverse.r-universe.dev",
  "Date/Publication": "2026-10-16 04:57:02 UTC",
  "RemoteUrl": "https://github.com/glycoverse/glydb",
  "RemoteRef": "v0.7.2",
  "RemoteSha": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-16 07:29:10 UTC",
    "User": "root"
  },
  "Author": "Bin Fu [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-8567-2997>)",
  "Maintainer": "Bin Fu <23110220018@m.fudan.edu.cn>",
  "_user": "glycoverse",
  "_type": "src",
  "_file": "glydb_0.7.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/0bd0785363f2959317229d17eb7ad681c06f6fefe4d2332415eba01892d15757",
  "_filesize": 4735064,
  "_sha256": "0bd0785363f2959317229d17eb7ad681c06f6fefe4d2332415eba01892d15757",
  "_expires": "2027-01-24T08:02:05.000Z",
  "_created": "2026-10-16T07:29:10.000Z",
  "_published": "2026-10-16T08:02:07.280Z",
  "_buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116864003630,
      "time": 273,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12031997543"
    },
    {
      "job": 116864003616,
      "time": 343,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12031724205"
    },
    {
      "job": 116864003650,
      "time": 352,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12033596415"
    },
    {
      "job": 116864003613,
      "time": 478,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12032758248"
    },
    {
      "job": 116862762616,
      "time": 219,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12031587697"
    },
    {
      "job": 116864003589,
      "time": 148,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12032231257"
    },
    {
      "job": 116864003736,
      "time": 364,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12032431408"
    },
    {
      "job": 116864003632,
      "time": 354,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12032067693"
    },
    {
      "job": 116864003776,
      "time": 350,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12031928218"
    }
  ],
  "_upstream": "https://github.com/glycoverse/glydb",
  "_commit": {
    "id": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
    "author": "fubin1999 <65430559+fubin1999@users.noreply.github.com>",
    "committer": "fubin1999 <65430559+fubin1999@users.noreply.github.com>",
    "message": "chore: release version 0.7.2\n",
    "time": 1792126622
  },
  "_maintainer": {
    "name": "Bin Fu",
    "email": "23110220018@m.fudan.edu.cn",
    "orcid": "0000-0001-8567-2997"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "glyrepr",
      "version": ">= 1.1.0",
      "role": "Imports"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "vctrs",
      "role": "Imports"
    },
    {
      "package": "glyparse",
      "version": ">= 0.8.1",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    }
  ],
  "_owner": "glycoverse",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-43",
      "n": 7
    },
    {
      "week": "2025-44",
      "n": 9
    },
    {
      "week": "2025-45",
      "n": 4
    },
    {
      "week": "2025-46",
      "n": 15
    },
    {
      "week": "2025-47",
      "n": 11
    },
    {
      "week": "2025-48",
      "n": 3
    },
    {
      "week": "2026-04",
      "n": 3
    },
    {
      "week": "2026-05",
      "n": 5
    },
    {
      "week": "2026-06",
      "n": 4
    },
    {
      "week": "2026-07",
      "n": 10
    },
    {
      "week": "2026-09",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 4
    },
    {
      "week": "2026-23",
      "n": 4
    },
    {
      "week": "2026-26",
      "n": 2
    },
    {
      "week": "2026-27",
      "n": 1
    },
    {
      "week": "2026-28",
      "n": 3
    },
    {
      "week": "2026-30",
      "n": 1
    },
    {
      "week": "2026-31",
      "n": 1
    },
    {
      "week": "2026-34",
      "n": 3
    },
    {
      "week": "2026-37",
      "n": 2
    },
    {
      "week": "2026-40",
      "n": 2
    },
    {
      "week": "2026-42",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2025-10-27"
    },
    {
      "name": "v0.1.1",
      "date": "2025-11-03"
    },
    {
      "name": "v0.2.0",
      "date": "2025-11-15"
    },
    {
      "name": "v0.2.1",
      "date": "2025-11-17"
    },
    {
      "name": "v0.3.0",
      "date": "2025-11-22"
    },
    {
      "name": "v0.3.1",
      "date": "2025-11-24"
    },
    {
      "name": "v0.3.2",
      "date": "2026-01-27"
    },
    {
      "name": "v0.3.3",
      "date": "2026-02-06"
    },
    {
      "name": "v0.4.0",
      "date": "2026-02-13"
    },
    {
      "name": "v0.4.1",
      "date": "2026-03-29"
    },
    {
      "name": "v0.5.0",
      "date": "2026-06-03"
    },
    {
      "name": "v0.6.0",
      "date": "2026-07-07"
    },
    {
      "name": "v0.7.0",
      "date": "2026-09-07"
    },
    {
      "name": "v0.7.1",
      "date": "2026-10-13"
    },
    {
      "name": "v0.7.2",
      "date": "2026-10-16"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "fubin1999",
      "count": 100,
      "uuid": 65430559
    }
  ],
  "_userbio": {
    "uuid": 188668119,
    "type": "organization",
    "name": "glycoverse",
    "followers": 6,
    "description": "A modern glycomics and glycoproteomics data analysis framework in R."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/glydb"
  },
  "_devurl": "https://github.com/glycoverse/glydb",
  "_pkgdown": "https://glycoverse.github.io/glydb/",
  "_searchresults": 12,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/glydb.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "glydb_compositions",
    "glydb_species",
    "glydb_structures",
    "glytoucan_to_struc",
    "struc_to_glytoucan"
  ],
  "_datasets": [
    {
      "name": "glydb_data",
      "title": "GlyGen Glycan Data",
      "object": "glydb_data",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "glytoucan_ac",
        "glycan_structure",
        "glycan_composition",
        "species",
        "confidence",
        "glycan_type"
      ],
      "rows": 49728,
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "glydb_compositions",
      "title": "Get Compositions From Glydb Data",
      "topics": [
        "glydb_compositions"
      ]
    },
    {
      "page": "glydb_data",
      "title": "GlyGen Glycan Data",
      "topics": [
        "glydb_data"
      ]
    },
    {
      "page": "glydb_species",
      "title": "Get Supported Species From Glydb Data",
      "topics": [
        "glydb_species"
      ]
    },
    {
      "page": "glydb_structures",
      "title": "Get Structures From Glydb Data",
      "topics": [
        "glydb_structures"
      ]
    },
    {
      "page": "glytoucan_to_struc",
      "title": "Convert GlyTouCan Accessions to Glycan Structures",
      "topics": [
        "glytoucan_to_struc"
      ]
    },
    {
      "page": "struc_to_glytoucan",
      "title": "Convert Glycan Structures to GlyTouCan Accessions",
      "topics": [
        "struc_to_glytoucan"
      ]
    }
  ],
  "_pkglogo": "https://github.com/glycoverse/glydb/raw/v0.7.2/man/figures/logo.png",
  "_readme": "https://github.com/glycoverse/glydb/raw/v0.7.2/README.md",
  "_rundeps": [
    "backports",
    "checkmate",
    "cli",
    "cpp11",
    "dplyr",
    "generics",
    "glue",
    "glyrepr",
    "igraph",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "Rcpp",
    "rlang",
    "rstackdeque",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 3.6170003411208986,
  "_indexed": true,
  "_nocasepkg": "glydb",
  "_universes": [
    "glycoverse"
  ],
  "_previous": "0.7.1",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.7.2",
      "date": "2026-10-16T07:32:03.000Z",
      "distro": "resolute",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/5c270a128072b2f73e9152eeb4769ff9a2c0795088e3ca3af1bf2ea2b80a9f4e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.7.2",
      "date": "2026-10-16T07:32:02.000Z",
      "distro": "resolute",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/ed0c06eb7ff38f51e14b9da06a298f8e09784e727408c766f0b48af57a0f0fdc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.7.2",
      "date": "2026-10-16T07:57:08.000Z",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/33481de18556c79b62b209b893b1c8230e77ee3c8ee705efeeb997346d0adba8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.7.2",
      "date": "2026-10-16T07:53:59.000Z",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/af6b96ff78e698be55c79cf65f2125c697f4a89e93b68138063c28df8b7b1746",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.7.2",
      "date": "2026-10-16T07:32:11.000Z",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/dfb7bda04b650a7ab2e4a4ae32c9d78ba2eaceb1d08037e6ce48945945958350",
      "status": "success",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.7.2",
      "date": "2026-10-16T07:31:10.000Z",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/735594fdfdc38bebac448f9c09f703b36df28e9cfb1e482963d7587553f61593",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.7.2",
      "date": "2026-10-16T07:31:08.000Z",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/859039e278edd2f46292bad65970af154ae42d483fa2443fbdabab5857d1f8fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.7.2",
      "date": "2026-10-16T07:31:13.000Z",
      "commit": "af614eaf3b6748fe0a8edc9f65b7bed8c61d1ada",
      "fileid": "https://r2.ropensci.org/5800bcea93d1fdab67eb85e7e1e6457b2c183d79f64325cd8606c788d298bd9c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/38867191722"
    }
  ]
}