{ "_id": "6ad4a6b564aea59ac637bd64", "Package": "glyhub", "Title": "Curated Glycomics and Glycoproteomics Data Resources", "Version": "0.1.0", "Authors@R": "person(\"Bin\", \"Fu\", , \"23110220018@m.fudan.edu.cn\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8567-2997\"))", "Description": "Provides access to curated public glycomics and\nglycoproteomics datasets from GlycoPOST, CPTAC, and published\nstudies as 'glyexp' 'GlycomicSE' and 'GlycoproteomicSE'\nobjects. Datasets preserve source molecular annotations,\nmeasurement provenance, and explicit processing records. A\ncatalog and shared loader retrieve data from versioned GitHub\nReleases, verify file integrity with SHA-256 checksums, and\ncache downloads for offline reuse.", "License": "MIT + file LICENSE", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "URL": "https://glycoverse.github.io/glyhub/,\nhttps://github.com/glycoverse/glyhub", "BugReports": "https://github.com/glycoverse/glyhub/issues", "Additional_repositories": "https://glycoverse.r-universe.dev", "Config/roxygen2/version": "8.1.1", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev zlib1g-dev", "Repository": "https://glycoverse.r-universe.dev", "Date/Publication": "2026-10-17 09:28:36 UTC", "RemoteUrl": "https://github.com/glycoverse/glyhub", "RemoteRef": "v0.1.0", "RemoteSha": "8be78ea4a2870032ce114c0a9994dc51faa55a59", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-18 10:52:08 UTC", "User": "root" }, "Author": "Bin Fu [aut, cre, cph] (ORCID: )", "Maintainer": "Bin Fu <23110220018@m.fudan.edu.cn>", "_user": "glycoverse", "_type": "src", "_file": "glyhub_0.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/2fb1db94d8db994333fea73bd727117149344cafa4c7712cdbe2238befcb5e50", "_filesize": 661292, "_sha256": "2fb1db94d8db994333fea73bd727117149344cafa4c7712cdbe2238befcb5e50", "_expires": "2027-01-26T11:00:03.000Z", "_created": "2026-10-18T10:52:08.000Z", "_published": "2026-10-18T11:00:05.089Z", "_buildurl": "https://github.com/r-universe/glycoverse/actions/runs/39120739567", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117656393904, "time": 236, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12134735551" }, { "job": 117656393894, "time": 339, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12134406810" }, { "job": 117656393947, "time": 250, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12133529320" }, { "job": 117656393945, 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"chore: release version 0.1.0\n", "time": 1792229316 }, "_maintainer": { "name": "Bin Fu", "email": "23110220018@m.fudan.edu.cn", "orcid": "0000-0001-8567-2997" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1", "role": "Depends" }, { "package": "digest", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "glyexp", "version": ">= 0.17.0", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "glyrepr", "role": "Suggests" }, { "package": "jsonlite", "role": "Suggests" }, { "package": "readxl", "role": "Suggests" }, { "package": "S4Vectors", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "glycoverse", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-42", "n": 37 } ], "_tags": [ { "name": "data-v0.1.0", "date": "2026-10-16" }, { "name": "v0.1.0", "date": "2026-10-17" } ], "_topics": [ "datasets", "glycomics", "glycoproteomics", "glycoverse" ], "_stars": 0, "_contributors": [ { "user": "fubin1999", "count": 38, "uuid": 65430559 } ], "_userbio": { "uuid": 188668119, "type": "organization", "name": "glycoverse", "followers": 6, "description": "A modern glycomics and glycoproteomics data analysis framework in R." }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/glyhub" }, "_devurl": "https://github.com/glycoverse/glyhub", "_pkgdown": "https://glycoverse.github.io/glyhub/", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/glyhub.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [ "glyhub_catalog", "glyhub_CPTAC_CCRCC", "glyhub_CPTAC_COAD", "glyhub_CPTAC_HGSC", "glyhub_CPTAC_HNSCC", "glyhub_CPTAC_LSCC", "glyhub_CPTAC_LUAD", "glyhub_CPTAC_PDAC", "glyhub_CPTAC_UCEC", "glyhub_GPST000009_O", "glyhub_GPST000027_031_N", "glyhub_GPST000035_O", "glyhub_GPST000079_N", "glyhub_GPST000120_O_Spike_ACE2", "glyhub_GPST000125_GSL_HEK293", "glyhub_GPST000125_N_HEK293", "glyhub_GPST000125_O_HEK293", "glyhub_GPST000128_n_precursor", "glyhub_GPST000128_o_precursor", "glyhub_GPST000170_N", "glyhub_GPST000170_O", "glyhub_GPST000183_n", "glyhub_GPST000183_o", "glyhub_GPST000190_N", "glyhub_GPST000211_O", "glyhub_GPST000213_N", "glyhub_GPST000213_O", "glyhub_GPST000214_N_AML_CellLines", "glyhub_GPST000214_O_AML_CellLines", "glyhub_GPST000239_GSL", "glyhub_GPST000240_GSL", "glyhub_GPST000240_N", "glyhub_GPST000271_N_CAL51", "glyhub_GPST000271_O_CAL51", "glyhub_GPST000294_N_Celegans_L4", "glyhub_GPST000294_O_Celegans_Development", "glyhub_GPST000296_N", "glyhub_GPST000296_N_Glycoproteomics", "glyhub_GPST000297_N", "glyhub_GPST000297_O", "glyhub_GPST000299_GSL", "glyhub_GPST000299_N", "glyhub_GPST000351_N", "glyhub_GPST000374_O", "glyhub_GPST000374_sssmug_gsl", "glyhub_GPST000374_sssmug_n", "glyhub_GPST000381_N_Prosaposin", "glyhub_GPST000403_N", "glyhub_GPST000431_N", "glyhub_GPST000460_N", "glyhub_GPST000473_N", "glyhub_GPST000533_N_Glycopeptides", "glyhub_GPST000533_N_Released", "glyhub_GPST000534_N", "glyhub_GPST000562_CS_DS", "glyhub_GPST000578_N_Fetuin_TwoSites", "glyhub_GPST000578_N_source_repeatability_intensity", "glyhub_GPST000578_N_total_peak_area", "glyhub_GPST000584_N", "glyhub_GPST000585_N", "glyhub_GPST000596_N", "glyhub_GPST000599_serum_n", "glyhub_GPST000601_N", "glyhub_GPST000601_N_glycopeptides", "glyhub_GPST000602_Sh_GSL", "glyhub_GPST000602_Sh_N", "glyhub_GPST000602_Sh_O", "glyhub_GPST000602_Sm_GSL", "glyhub_GPST000602_Sm_N", "glyhub_GPST000604_CS_DS", "glyhub_GPST000604_HS", "glyhub_GPST000625_N", "glyhub_GPST000643_N", "glyhub_GPST000643_O", "glyhub_GPST000647_N", "glyhub_GPST000650_O", "glyhub_GPST000667_N", "glyhub_GPST000671_N", "glyhub_GPST000671_N_Glycoproteomics", "glyhub_GPST000671_O", "glyhub_GPST000671_O_Glycoproteomics", "glyhub_GPST000676_GAG", "glyhub_GPST000738_N_B4GalT1", "glyhub_GPST000738_N_ST6GAL1", "glyhub_IPX0011099000_N_Brain", "glyhub_load", "glyhub_MSV000089484_N_HCC", "glyhub_PXD011063_O_Dilution", "glyhub_PXD011063_O_SerumSA", "glyhub_PXD046637_N_Lung", "glyhub_PXD052447_N_Microbiome", "glyhub_PXD052447_N_PNGase", "glyhub_PXD052447_N_ProteinaseK", "glyhub_PXD052447_N_Solubility", "glyhub_PXD052447_N_Tissues", "glyhub_PXD052447_N_TwoFF", "glyhub_PXD065283_N_DiscoverySelected", "glyhub_PXD065283_N_QC", "glyhub_PXD070547_N_HumanAtlas" ], "_help": [ { "page": "glyhub_catalog", "title": "List available glyhub datasets", "topics": [ "glyhub_catalog" ] }, { "page": "glyhub_CPTAC_CCRCC", "title": "Clear cell renal cell carcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_CCRCC" ] }, { "page": "glyhub_CPTAC_COAD", "title": "Colon adenocarcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_COAD" ] }, { "page": "glyhub_CPTAC_HGSC", "title": "High-grade serous ovarian carcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_HGSC" ] }, { "page": "glyhub_CPTAC_HNSCC", "title": "Head and neck squamous cell carcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_HNSCC" ] }, { "page": "glyhub_CPTAC_LSCC", "title": "Lung squamous cell carcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_LSCC" ] }, { "page": "glyhub_CPTAC_LUAD", "title": "Lung adenocarcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_LUAD" ] }, { "page": "glyhub_CPTAC_PDAC", "title": "Pancreatic ductal adenocarcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_PDAC" ] }, { "page": "glyhub_CPTAC_UCEC", "title": "Uterine corpus endometrial carcinoma: CPTAC N-glycoproteome", "topics": [ "glyhub_CPTAC_UCEC" ] }, { "page": "glyhub_data_conventions", "title": "Measurement and annotation conventions for glyhub datasets", "topics": [ "glyhub_data_conventions" ] }, { "page": "glyhub_GPST000009_O", "title": "Atlantic salmon epithelial mucin O-glycans", "topics": [ "glyhub_GPST000009_O" ] }, { "page": "glyhub_GPST000027_031_N", "title": "Mgat3 mouse brain and kidney N-glycan source profiles", "topics": [ "glyhub_GPST000027_031_N" ] }, { "page": "glyhub_GPST000035_O", "title": "O-glycan profile of Fetuin_standard and related study experiments", "topics": [ "glyhub_GPST000035_O" ] }, { "page": "glyhub_GPST000079_N", "title": "Postnatal mouse skeletal-muscle N-glycome", "topics": [ "glyhub_GPST000079_N" ] }, { "page": "glyhub_GPST000120_O_Spike_ACE2", "title": "Released O-glycans of recombinant SARS-CoV-2 Spike and ACE2", "topics": [ "glyhub_GPST000120_O_Spike_ACE2" ] }, { "page": "glyhub_GPST000125_GSL_HEK293", "title": "Glycosphingolipid glycan profiles in HEK293 glycosylation-knockout cells", "topics": [ "glyhub_GPST000125_GSL_HEK293" ] }, { "page": "glyhub_GPST000125_N_HEK293", "title": "N-glycan profiles in HEK293 glycosylation-knockout cells", "topics": [ "glyhub_GPST000125_N_HEK293" ] }, { "page": "glyhub_GPST000125_O_HEK293", "title": "O-glycan profiles in HEK293 glycosylation-knockout cells", "topics": [ "glyhub_GPST000125_O_HEK293" ] }, { "page": "glyhub_GPST000128_n_precursor", "title": "Red-blood-cell N-glycan precursor quantification", "topics": [ "glyhub_GPST000128_n_precursor" ] }, { "page": "glyhub_GPST000128_o_precursor", "title": "Red-blood-cell O-glycan precursor quantification", "topics": [ "glyhub_GPST000128_o_precursor" ] }, { "page": "glyhub_GPST000170_N", "title": "Ion-source dopant effects on N-glycan signal", "topics": [ "glyhub_GPST000170_N" ] }, { "page": "glyhub_GPST000170_O", "title": "Ion-source dopant effects on O-glycan signal", "topics": [ "glyhub_GPST000170_O" ] }, { "page": "glyhub_GPST000183_n", "title": "MLL-rearranged B-cell precursor ALL N-glycome", "topics": [ "glyhub_GPST000183_n" ] }, { "page": "glyhub_GPST000183_o", "title": "MLL-rearranged B-cell precursor ALL O-glycome", "topics": [ "glyhub_GPST000183_o" ] }, { "page": "glyhub_GPST000190_N", "title": "Linkage-specific sialic-acid derivatization of plasma N-glycans", "topics": [ "glyhub_GPST000190_N" ] }, { "page": "glyhub_GPST000211_O", "title": "O-glycans released by thrombin-activated human platelets", "topics": [ "glyhub_GPST000211_O" ] }, { "page": "glyhub_GPST000213_N", "title": "Mouse CTX (M) N-glycan source peak profiles and related study experiments", "topics": [ "glyhub_GPST000213_N" ] }, { "page": "glyhub_GPST000213_O", "title": "Mouse CTX (M) O-glycan source peak profiles and related study experiments", "topics": [ "glyhub_GPST000213_O" ] }, { "page": "glyhub_GPST000214_N_AML_CellLines", "title": "N-glycan profiles of 21 acute myeloid leukemia cell lines", "topics": [ "glyhub_GPST000214_N_AML_CellLines" ] }, { "page": "glyhub_GPST000214_O_AML_CellLines", "title": "O-glycan profiles of 21 acute myeloid leukemia cell lines", "topics": [ "glyhub_GPST000214_O_AML_CellLines" ] }, { "page": "glyhub_GPST000239_GSL", "title": "Colorectal-cancer cell-line glycosphingolipid glycans", "topics": [ "glyhub_GPST000239_GSL" ] }, { "page": "glyhub_GPST000240_GSL", "title": "Brugia malayi glycosphingolipid glycans across life stages", "topics": [ "glyhub_GPST000240_GSL" ] }, { "page": "glyhub_GPST000240_N", "title": "Brugia malayi N-glycans across life stages", "topics": [ "glyhub_GPST000240_N" ] }, { "page": "glyhub_GPST000271_N_CAL51", "title": "N-glycan profiles in CAL51 Golgi knockout cells", "topics": [ "glyhub_GPST000271_N_CAL51" ] }, { "page": "glyhub_GPST000271_O_CAL51", "title": "O-glycan profiles in CAL51 Golgi knockout cells", "topics": [ "glyhub_GPST000271_O_CAL51" ] }, { "page": "glyhub_GPST000294_N_Celegans_L4", "title": "Caenorhabditis elegans L4 N-glycans across culture and release fractions", "topics": [ "glyhub_GPST000294_N_Celegans_L4" ] }, { "page": "glyhub_GPST000294_O_Celegans_Development", "title": "Caenorhabditis elegans developmental O-glycan profiles", "topics": [ "glyhub_GPST000294_O_Celegans_Development" ] }, { "page": "glyhub_GPST000296_N", "title": "Oral tumor N-glycans associated with lymph node metastasis", "topics": [ "glyhub_GPST000296_N" ] }, { "page": "glyhub_GPST000296_N_Glycoproteomics", "title": "Site-specific N-glycoproteome of oral squamous-cell carcinoma tissues", "topics": [ "glyhub_GPST000296_N_Glycoproteomics" ] }, { "page": "glyhub_GPST000297_N", "title": "Cornu aspersum mucus N-glycan profiles", "topics": [ "glyhub_GPST000297_N" ] }, { "page": "glyhub_GPST000297_O", "title": "Cornu aspersum mucus O-glycan profiles", "topics": [ "glyhub_GPST000297_O" ] }, { "page": "glyhub_GPST000299_GSL", "title": "Onchocerca volvulus adult-female GSL glycan profile", "topics": [ "glyhub_GPST000299_GSL" ] }, { "page": "glyhub_GPST000299_N", "title": "Onchocerca volvulus adult-female N glycan profile", "topics": [ "glyhub_GPST000299_N" ] }, { "page": "glyhub_GPST000351_N", "title": "Plasma N-glycomes of ASGR1- and MRC1-deficient mice under dietary challenge", "topics": [ "glyhub_GPST000351_N" ] }, { "page": "glyhub_GPST000374_O", "title": "SSSMuG: Same Sample Sequential Multi-Glycomics. and related study experiments", "topics": [ "glyhub_GPST000374_O" ] }, { "page": "glyhub_GPST000374_sssmug_gsl", "title": "SSSMuG: Same Sample Sequential Multi-Glycomics.", "topics": [ "glyhub_GPST000374_sssmug_gsl" ] }, { "page": "glyhub_GPST000374_sssmug_n", "title": "SSSMuG: Same Sample Sequential Multi-Glycomics.", "topics": [ "glyhub_GPST000374_sssmug_n" ] }, { "page": "glyhub_GPST000381_N_Prosaposin", "title": "Released N-glycans of pSAP65 and pSAP75 prosaposin forms", "topics": [ "glyhub_GPST000381_N_Prosaposin" ] }, { "page": "glyhub_GPST000403_N", "title": "Rat serum N-glycans after chronic herbicide exposure", "topics": [ "glyhub_GPST000403_N" ] }, { "page": "glyhub_GPST000431_N", "title": "Swift Universal Glycan Acquisition (SUGA) Enables Quantitative Glycan Profiling across Diverse Sample Types. and related study experiments", "topics": [ "glyhub_GPST000431_N" ] }, { "page": "glyhub_GPST000460_N", "title": "Cardiac N-glycomes in fatal COVID-19", "topics": [ "glyhub_GPST000460_N" ] }, { "page": "glyhub_GPST000473_N", "title": "N-glycan remodeling after TANGO2 loss", "topics": [ "glyhub_GPST000473_N" ] }, { "page": "glyhub_GPST000533_N_Glycopeptides", "title": "Desialylated haptoglobin glycopeptides in sepsis serum", "topics": [ "glyhub_GPST000533_N_Glycopeptides" ] }, { "page": "glyhub_GPST000533_N_Released", "title": "Desialylated haptoglobin released N-glycans in sepsis serum", "topics": [ "glyhub_GPST000533_N_Released" ] }, { "page": "glyhub_GPST000534_N", "title": "N-glycan profiles of two tardigrade species", "topics": [ "glyhub_GPST000534_N" ] }, { "page": "glyhub_GPST000562_CS_DS", "title": "CS/DS disaccharide amounts in A549 and BEAS-2B small extracellular vesicles", "topics": [ "glyhub_GPST000562_CS_DS" ] }, { "page": "glyhub_GPST000578_N_Fetuin_TwoSites", "title": "Fetuin N-glycan peak areas across two instrument sites", "topics": [ "glyhub_GPST000578_N_Fetuin_TwoSites" ] }, { "page": "glyhub_GPST000578_N_source_repeatability_intensity", "title": "Ovalbumin N-glycan repeatability profiles and related study experiments", "topics": [ "glyhub_GPST000578_N_source_repeatability_intensity" ] }, { "page": "glyhub_GPST000578_N_total_peak_area", "title": "Immunoglobulins N-glycan total peak areas and related study experiments", "topics": [ "glyhub_GPST000578_N_total_peak_area" ] }, { "page": "glyhub_GPST000584_N", "title": "Serum N-glycan profiles across hepatocellular carcinoma progression", "topics": [ "glyhub_GPST000584_N" ] }, { "page": "glyhub_GPST000585_N", "title": "Bladder-tissue N-glycans across cancer stages", "topics": [ "glyhub_GPST000585_N" ] }, { "page": "glyhub_GPST000596_N", "title": "Platelet N-glycan isomer profiles in control and FUT8-knockout mice", "topics": [ "glyhub_GPST000596_N" ] }, { "page": "glyhub_GPST000599_serum_n", "title": "Septic shock longitudinal serum N-glycome", "topics": [ "glyhub_GPST000599_serum_n" ] }, { "page": "glyhub_GPST000601_N", "title": "Longitudinal rat-serum released N-glycans", "topics": [ "glyhub_GPST000601_N" ] }, { "page": "glyhub_GPST000601_N_glycopeptides", "title": "Rat serum N-glycopeptides across repeated sampling", "topics": [ "glyhub_GPST000601_N_glycopeptides" ] }, { "page": "glyhub_GPST000602_Sh_GSL", "title": "Major human schistosome species express different glycans with immunological and diagnostic implications", "topics": [ "glyhub_GPST000602_Sh_GSL" ] }, { "page": "glyhub_GPST000602_Sh_N", "title": "Major human schistosome species express different glycans with immunological and diagnostic implications", "topics": [ "glyhub_GPST000602_Sh_N" ] }, { "page": "glyhub_GPST000602_Sh_O", "title": "Major human schistosome species express different glycans with immunological and diagnostic implications", "topics": [ "glyhub_GPST000602_Sh_O" ] }, { "page": "glyhub_GPST000602_Sm_GSL", "title": "Major human schistosome species express different glycans with immunological and diagnostic implications", "topics": [ "glyhub_GPST000602_Sm_GSL" ] }, { "page": "glyhub_GPST000602_Sm_N", "title": "Major human schistosome species express different glycans with immunological and diagnostic implications", "topics": [ "glyhub_GPST000602_Sm_N" ] }, { "page": "glyhub_GPST000604_CS_DS", "title": "Chondroitin/dermatan sulfate disaccharide profiles measured by HILIC-Q-TOF-MS", "topics": [ "glyhub_GPST000604_CS_DS" ] }, { "page": "glyhub_GPST000604_HS", "title": "Heparan sulfate disaccharide profiles measured by HILIC-Q-TOF-MS", "topics": [ "glyhub_GPST000604_HS" ] }, { "page": "glyhub_GPST000625_N", "title": "Human intervertebral-disc N-glycan chromatographic profiles", "topics": [ "glyhub_GPST000625_N" ] }, { "page": "glyhub_GPST000643_N", "title": "GH20 activity on N-glycans from pretreated PSGL-1 and related study experiments", "topics": [ "glyhub_GPST000643_N" ] }, { "page": 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