{ "_id": "6a1019c2acfb0bcc41c8612c", "Package": "glyrepr", "Title": "Representation for Glycan Compositions and Structures", "Version": "0.12.0", "Authors@R": "person(\"Bin\", \"Fu\", , \"23110220018@m.fudan.edu.cn\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8567-2997\"))", "Description": "Computational representations of glycan compositions and\nstructures, including details such as linkages, anomers, and\nsubstituents. Supports varying levels of monosaccharide\nspecificity (e.g., \"Hex\" or \"Gal\") and ambiguous linkages.\nProvides robust parsing and generation of IUPAC-condensed\nstructure strings. Optimized for vectorized operations on\nglycan structures, with efficient handling of duplications. As\nthe cornerstone of the glycoverse ecosystem, this package\ndelivers the foundational data structures that power glycomics\nand glycoproteomics analysis workflows.", "License": "MIT + file LICENSE", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "URL": "https://glycoverse.github.io/glyrepr/,\nhttps://github.com/glycoverse/glyrepr", "VignetteBuilder": "knitr", "BugReports": "https://github.com/glycoverse/glyrepr/issues", "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev", "Repository": "https://glycoverse.r-universe.dev", "Date/Publication": "2026-05-14 10:12:56 UTC", "RemoteUrl": "https://github.com/glycoverse/glyrepr", "RemoteRef": "v0.12.0", "RemoteSha": "e8fe75bd637db3cc40a5b137bd286b09a74936d8", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-14 15:28:01 UTC", "User": "root" }, "Author": "Bin Fu [aut, cre, cph] (ORCID: )", "Maintainer": "Bin Fu <23110220018@m.fudan.edu.cn>", "MD5sum": 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Monosaccharides", "topics": [ "count_mono", "count_mono.glyrepr_composition", "count_mono.glyrepr_structure" ] }, { "page": "fill_anomer_pos", "title": "Fill Anomer Positions", "topics": [ "fill_anomer_pos" ] }, { "page": "get_anomer", "title": "Get the Anomeric information", "topics": [ "get_anomer" ] }, { "page": "get_anomer_pos", "title": "Get Anomer Positions", "topics": [ "get_anomer_pos" ] }, { "page": "get_mono_type", "title": "Get Monosaccharide Types", "topics": [ "get_mono_type", "get_mono_type.character", "get_mono_type.glyrepr_composition", "get_mono_type.glyrepr_structure" ] }, { "page": "get_structure_graphs", "title": "Access Individual Glycan Structures", "topics": [ "get_structure_graphs" ] }, { "page": "get_structure_level", "title": "Get the Structure Resolution Levels", "topics": [ "get_structure_level" ] }, { "page": "glycan_composition", "title": "Create a Glycan Composition", "topics": [ "glycan_composition", "is_glycan_composition" ] }, { "page": 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"simap", "title": "Map Functions Over Glycan Structure Vectors with Indices", "topics": [ "simap", "simap_chr", "simap_dbl", "simap_int", "simap_lgl", "simap_structure", "simap_vec" ] }, { "page": "smap", "title": "Map Functions Over Glycan Structure Vectors", "topics": [ "smap", "smap_chr", "smap_dbl", "smap_int", "smap_lgl", "smap_structure", "smap_vec" ] }, { "page": "smap_predicates", "title": "Test Predicates on Glycan Structure Vectors", "topics": [ "severy", "smap_predicates", "snone", "ssome" ] }, { "page": "smap_unique", "title": "Apply Function to Unique Structures Only", "topics": [ "smap_unique" ] }, { "page": "smap2", "title": "Map Functions Over Two Glycan Structure Vectors", "topics": [ "smap2", "smap2_chr", "smap2_dbl", "smap2_int", "smap2_lgl", "smap2_structure", "smap2_vec" ] }, { "page": "spmap", "title": "Map Functions Over Glycan Structure Vectors and Multiple Arguments", "topics": [ "spmap", "spmap_chr", "spmap_dbl", "spmap_int", "spmap_lgl", "spmap_structure", "spmap_vec" ] }, { "page": "structure_to_iupac", "title": "Convert Glycan Structure to IUPAC-like Sequence", "topics": [ "structure_to_iupac" ] }, { "page": "valid_linkages", "title": "Check if Linkages are Valid", "topics": [ "valid_linkages" ] } ], "_pkglogo": "https://github.com/glycoverse/glyrepr/raw/v0.12.0/man/figures/logo.png", "_readme": "https://github.com/glycoverse/glyrepr/raw/v0.12.0/README.md", "_rundeps": [ "backports", "checkmate", "cli", "codetools", "cpp11", "digest", "dplyr", "furrr", "future", "generics", "globals", "glue", "igraph", "lattice", "lifecycle", "listenv", "magrittr", "Matrix", "parallelly", "pillar", "pkgconfig", "purrr", "R6", "rlang", "rstackdeque", "stringi", "stringr", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "smap.Rmd", "filename": "smap.html", "title": "Efficient Glycan Manipulation with smap", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Unique Structure Optimization", "The Problem", "The 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