{
  "_id": "6a1c05201d7bb097a0a2a87d",
  "Package": "glyvis",
  "Title": "Fast Visualization For Glycoverse",
  "Version": "0.6.0",
  "Authors@R": "person(\"Bin\", \"Fu\", , \"23110220018@m.fudan.edu.cn\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8567-2997\"))",
  "Description": "Provides a unified interface for visualizing glycomics\ndata within the 'glycoverse' ecosystem. Implements 'autoplot()'\nmethods for various data structures including statistical\nresults from 'glystats', experimental data from 'glyexp', and\nglycan structures from 'glyrepr'. Designed for rapid data\nexploration and quality assessment rather than\npublication-quality figure generation.",
  "License": "MIT + file LICENSE",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "URL": "https://glycoverse.github.io/glyvis/",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev",
  "Repository": "https://glycoverse.r-universe.dev",
  "Date/Publication": "2026-05-01 03:58:36 UTC",
  "RemoteUrl": "https://github.com/glycoverse/glyvis",
  "RemoteRef": "v0.6.0",
  "RemoteSha": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-31 09:49:10 UTC",
    "User": "root"
  },
  "Author": "Bin Fu [aut, cre] (ORCID: <https://orcid.org/0000-0001-8567-2997>)",
  "Maintainer": "Bin Fu <23110220018@m.fudan.edu.cn>",
  "MD5sum": "01fa3bfc4f5e221f5c759acb22184361",
  "_user": "glycoverse",
  "_type": "src",
  "_file": "glyvis_0.6.0.tar.gz",
  "_fileid": "16d77615e04748b7f0a627b6c258ce72ea99306fd5c8b8a65d0507d2ec35ad7a",
  "_filesize": 668088,
  "_sha256": "16d77615e04748b7f0a627b6c258ce72ea99306fd5c8b8a65d0507d2ec35ad7a",
  "_created": "2026-05-31T09:49:10.000Z",
  "_published": "2026-05-31T09:53:36.202Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78716486253,
      "time": 223,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315747659"
    },
    {
      "job": 78716486251,
      "time": 230,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315748310"
    },
    {
      "job": 78716486250,
      "time": 163,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315741671"
    },
    {
      "job": 78716486267,
      "time": 151,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315740477"
    },
    {
      "job": 78716224580,
      "time": 289,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315726054"
    },
    {
      "job": 78716486248,
      "time": 195,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315744716"
    },
    {
      "job": 78716486266,
      "time": 179,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315743137"
    },
    {
      "job": 78716486269,
      "time": 206,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315745788"
    },
    {
      "job": 78716486263,
      "time": 130,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315738514"
    }
  ],
  "_buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/glycoverse/glyvis",
  "_commit": {
    "id": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
    "author": "fubin1999 <65430559+fubin1999@users.noreply.github.com>",
    "committer": "fubin1999 <65430559+fubin1999@users.noreply.github.com>",
    "message": "chore: release version 0.6.0\n",
    "time": 1777607916
  },
  "_maintainer": {
    "name": "Bin Fu",
    "email": "23110220018@m.fudan.edu.cn",
    "orcid": "0000-0001-8567-2997"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggplotify",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "glyexp",
      "version": ">= 0.10.0",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    },
    {
      "package": "glystats",
      "version": ">= 0.10.0",
      "role": "Suggests"
    },
    {
      "package": "glyclean",
      "version": ">= 0.7.1",
      "role": "Suggests"
    },
    {
      "package": "ggdendro",
      "role": "Suggests"
    },
    {
      "package": "factoextra",
      "role": "Suggests"
    },
    {
      "package": "GGally",
      "role": "Suggests"
    },
    {
      "package": "enrichplot",
      "role": "Suggests"
    },
    {
      "package": "EnhancedVolcano",
      "role": "Suggests"
    },
    {
      "package": "ggseqlogo",
      "role": "Suggests"
    },
    {
      "package": "UniProt.ws",
      "role": "Suggests"
    },
    {
      "package": "pheatmap",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "patchwork",
      "role": "Suggests"
    }
  ],
  "_owner": "glycoverse",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-26",
      "n": 2
    },
    {
      "week": "2025-30",
      "n": 28
    },
    {
      "week": "2025-31",
      "n": 21
    },
    {
      "week": "2025-33",
      "n": 1
    },
    {
      "week": "2025-34",
      "n": 2
    },
    {
      "week": "2025-35",
      "n": 2
    },
    {
      "week": "2025-36",
      "n": 1
    },
    {
      "week": "2025-37",
      "n": 2
    },
    {
      "week": "2025-38",
      "n": 14
    },
    {
      "week": "2025-40",
      "n": 22
    },
    {
      "week": "2025-41",
      "n": 5
    },
    {
      "week": "2025-43",
      "n": 23
    },
    {
      "week": "2025-51",
      "n": 21
    },
    {
      "week": "2026-01",
      "n": 5
    },
    {
      "week": "2026-02",
      "n": 10
    },
    {
      "week": "2026-04",
      "n": 1
    },
    {
      "week": "2026-05",
      "n": 1
    },
    {
      "week": "2026-07",
      "n": 7
    },
    {
      "week": "2026-09",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 8
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2025-08-24"
    },
    {
      "name": "v0.1.1",
      "date": "2025-08-29"
    },
    {
      "name": "v0.1.2",
      "date": "2025-09-12"
    },
    {
      "name": "v0.2.0",
      "date": "2025-09-18"
    },
    {
      "name": "v0.2.1",
      "date": "2025-10-01"
    },
    {
      "name": "v0.3.0",
      "date": "2025-10-05"
    },
    {
      "name": "v0.3.1",
      "date": "2025-10-09"
    },
    {
      "name": "v0.4.0",
      "date": "2025-10-20"
    },
    {
      "name": "v0.4.1",
      "date": "2025-12-17"
    },
    {
      "name": "v0.4.2",
      "date": "2025-12-18"
    },
    {
      "name": "v0.4.3",
      "date": "2025-12-20"
    },
    {
      "name": "v0.4.4",
      "date": "2025-12-21"
    },
    {
      "name": "v0.4.5",
      "date": "2025-12-30"
    },
    {
      "name": "v0.5.0",
      "date": "2026-01-07"
    },
    {
      "name": "v0.5.1",
      "date": "2026-02-10"
    },
    {
      "name": "v0.6.0",
      "date": "2026-05-01"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "fubin1999",
      "count": 180,
      "uuid": 65430559
    }
  ],
  "_userbio": {
    "uuid": 188668119,
    "type": "organization",
    "name": "glycoverse",
    "description": "A modern glycomics and glycoproteomics data analysis framework in R."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/glyvis"
  },
  "_devurl": "https://github.com/glycoverse/glyvis",
  "_pkgdown": "https://glycoverse.github.io/glyvis/",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/glyvis.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "autoplot",
    "plot_boxplot",
    "plot_corrplot",
    "plot_enrich",
    "plot_heatmap",
    "plot_logo",
    "plot_oplsda",
    "plot_pca",
    "plot_plsda",
    "plot_roc",
    "plot_tsne",
    "plot_umap",
    "plot_volcano"
  ],
  "_help": [
    {
      "page": "autoplot.glyexp_experiment",
      "title": "Plots for Experiments",
      "topics": [
        "autoplot.glyexp_experiment"
      ]
    },
    {
      "page": "autoplot.glystats_anova_res",
      "title": "Plots for Multi-Group Differential Expression Analysis (DEA)",
      "topics": [
        "autoplot.glystats_anova_res",
        "autoplot.glystats_kruskal_res"
      ]
    },
    {
      "page": "autoplot.glystats_cor_res",
      "title": "Plots for Correlation Analysis",
      "topics": [
        "autoplot.glystats_cor_res"
      ]
    },
    {
      "page": "autoplot.glystats_cox_res",
      "title": "Plots for Cox Proportional Hazards Model",
      "topics": [
        "autoplot.glystats_cox_res"
      ]
    },
    {
      "page": "autoplot.glystats_go_ora_res",
      "title": "Plots for Enrichment Analysis",
      "topics": [
        "autoplot.glystats_go_ora_res",
        "autoplot.glystats_kegg_ora_res",
        "autoplot.glystats_reactome_ora_res"
      ]
    },
    {
      "page": "autoplot.glystats_hclust_res",
      "title": "Plots for Hierarchical Clustering",
      "topics": [
        "autoplot.glystats_hclust_res"
      ]
    },
    {
      "page": "autoplot.glystats_limma_res",
      "title": "Plots for Limma Result",
      "topics": [
        "autoplot.glystats_limma_res"
      ]
    },
    {
      "page": "autoplot.glystats_oplsda_res",
      "title": "Plots for OPLS-DA",
      "topics": [
        "autoplot.glystats_oplsda_res"
      ]
    },
    {
      "page": "autoplot.glystats_pca_res",
      "title": "Plots for Principal Component Analysis (PCA)",
      "topics": [
        "autoplot.glystats_pca_res"
      ]
    },
    {
      "page": "autoplot.glystats_plsda_res",
      "title": "Plots for PLS-DA",
      "topics": [
        "autoplot.glystats_plsda_res"
      ]
    },
    {
      "page": "autoplot.glystats_roc_res",
      "title": "Plots for ROC Analysis",
      "topics": [
        "autoplot.glystats_roc_res"
      ]
    },
    {
      "page": "autoplot.glystats_tsne_res",
      "title": "Plots for t-SNE",
      "topics": [
        "autoplot.glystats_tsne_res"
      ]
    },
    {
      "page": "autoplot.glystats_ttest_res",
      "title": "Plots for 2-Group Differential Expression Analysis (DEA)",
      "topics": [
        "autoplot.glystats_ttest_res",
        "autoplot.glystats_wilcox_res"
      ]
    },
    {
      "page": "autoplot.glystats_umap_res",
      "title": "Plots for UMAP",
      "topics": [
        "autoplot.glystats_umap_res"
      ]
    },
    {
      "page": "plot_boxplot",
      "title": "Boxplot",
      "topics": [
        "plot_boxplot",
        "plot_boxplot.glyexp_experiment"
      ]
    },
    {
      "page": "plot_corrplot",
      "title": "Correlation Plot",
      "topics": [
        "plot_corrplot",
        "plot_corrplot.glyexp_experiment",
        "plot_corrplot.glystats_cor_res"
      ]
    },
    {
      "page": "plot_enrich",
      "title": "Plot Enrichment Analysis Results",
      "topics": [
        "plot_enrich",
        "plot_enrich.glyexp_experiment",
        "plot_enrich.glystats_go_ora_res",
        "plot_enrich.glystats_kegg_ora_res",
        "plot_enrich.glystats_reactome_ora_res"
      ]
    },
    {
      "page": "plot_heatmap",
      "title": "Heatmap",
      "topics": [
        "plot_heatmap",
        "plot_heatmap.glyexp_experiment"
      ]
    },
    {
      "page": "plot_logo",
      "title": "Logo Plot",
      "topics": [
        "plot_logo",
        "plot_logo.glyexp_experiment"
      ]
    },
    {
      "page": "plot_oplsda",
      "title": "OPLS-DA Plot",
      "topics": [
        "plot_oplsda",
        "plot_oplsda.glyexp_experiment",
        "plot_oplsda.glystats_oplsda_res"
      ]
    },
    {
      "page": "plot_pca",
      "title": "PCA Plot",
      "topics": [
        "plot_pca",
        "plot_pca.glyexp_experiment",
        "plot_pca.glystats_pca_res"
      ]
    },
    {
      "page": "plot_plsda",
      "title": "PLS-DA Plot",
      "topics": [
        "plot_plsda",
        "plot_plsda.glyexp_experiment",
        "plot_plsda.glystats_plsda_res"
      ]
    },
    {
      "page": "plot_roc",
      "title": "ROC plot",
      "topics": [
        "plot_roc",
        "plot_roc.glyexp_experiment",
        "plot_roc.glystats_roc_res"
      ]
    },
    {
      "page": "plot_tsne",
      "title": "t-SNE Plot",
      "topics": [
        "plot_tsne",
        "plot_tsne.glyexp_experiment",
        "plot_tsne.glystats_tsne_res"
      ]
    },
    {
      "page": "plot_umap",
      "title": "UMAP Plot",
      "topics": [
        "plot_umap",
        "plot_umap.glyexp_experiment",
        "plot_umap.glystats_umap_res"
      ]
    },
    {
      "page": "plot_volcano",
      "title": "Volcano Plot",
      "topics": [
        "plot_volcano",
        "plot_volcano.glyexp_experiment",
        "plot_volcano.glystats_limma_res",
        "plot_volcano.glystats_ttest_res",
        "plot_volcano.glystats_wilcox_res"
      ]
    }
  ],
  "_pkglogo": "https://github.com/glycoverse/glyvis/raw/v0.6.0/man/figures/logo.png",
  "_readme": "https://github.com/glycoverse/glyvis/raw/v0.6.0/README.md",
  "_rundeps": [
    "backports",
    "checkmate",
    "cli",
    "codetools",
    "cpp11",
    "digest",
    "dplyr",
    "farver",
    "fs",
    "furrr",
    "future",
    "generics",
    "ggplot2",
    "ggplotify",
    "ggrepel",
    "globals",
    "glue",
    "glyexp",
    "glyrepr",
    "gridGraphics",
    "gtable",
    "igraph",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "listenv",
    "magrittr",
    "Matrix",
    "parallelly",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "rstackdeque",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "yulab.utils"
  ],
  "_vignettes": [
    {
      "source": "glyvis.Rmd",
      "filename": "glyvis.html",
      "title": "Get Started with glyvis",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The Dual Nature of glyvis",
        "A Philosophy on Aesthetics"
      ],
      "created": "2025-09-18 04:24:36",
      "modified": "2025-09-18 04:24:36",
      "commits": 1
    }
  ],
  "_score": 4.518513939877888,
  "_indexed": true,
  "_nocasepkg": "glyvis",
  "_universes": [
    "glycoverse"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.6.0",
      "date": "2026-05-31T09:52:41.000Z",
      "distro": "noble",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "5fbf8076f3348794010f529e31dac8daf83cdfd8dc190ffafc64e670d1a508dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.6.0",
      "date": "2026-05-31T09:52:48.000Z",
      "distro": "noble",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "18d35767978d2aadd7438a43a6c0cdfb733bb12e9c5f869099a1872ee11df82e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.6.0",
      "date": "2026-05-31T09:51:41.000Z",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "a3ca1f53cdcd1e9043eaa3b607d32af16037fdc2afb4089891b504856bb02408",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.6.0",
      "date": "2026-05-31T09:51:36.000Z",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "81fbf568f75b28329b2e546b2df0beef9f6176d64432baba7b606cd0128a7542",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.6.0",
      "date": "2026-05-31T09:52:44.000Z",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "3c75f60d90041f1b4f15ebaa221049fc7dc199ebb0f265f736d61916006cf3ed",
      "status": "success",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.6.0",
      "date": "2026-05-31T09:51:52.000Z",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "9066948178b3abd7a34cd253681cb9be7abd8af7688be05ee085e65192898a64",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.6.0",
      "date": "2026-05-31T09:52:19.000Z",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "cdaba1ad0d30b1bd4c288d2d86f00f460d6db73afc8af20d0157298d3b26ac9d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.6.0",
      "date": "2026-05-31T09:51:01.000Z",
      "commit": "f6dadab709be927c3f33d22c5ae8c7cba7b0ae15",
      "fileid": "2ec51782bedd2b6b4cdfb378adfd425ccf9165a1a95118e01dc4776fcf729155",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/glycoverse/actions/runs/26709231123"
    }
  ]
}