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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "glyclean" in publications use:'
type: software
license: MIT
title: 'glyclean: Perform Preprocessing on Glycomics and Glycoproteomics Data'
version: 0.14.1
doi: 10.32614/CRAN.package.glyclean
abstract: Provides comprehensive data preprocessing tools for glycomics and glycoproteomics
  experiments. The package offers both automated and manual preprocessing pipelines,
  including normalization (median, quantile, vsn, total area), missing value handling
  (filtering, imputation using various methods), batch effect correction (using ComBat
  and other methods), data aggregation (at peptide, glycan, or site level), and quality
  control functions. The automated pipeline intelligently selects appropriate methods
  based on data characteristics and sample size, making it easy to prepare clean,
  analysis-ready data for downstream statistical analysis within the glycoverse ecosystem.
  Works seamlessly with 'glyexp::experiment()' objects to ensure data consistency
  and interoperability.
authors:
- family-names: Fu
  given-names: Bin
  email: 23110220018@m.fudan.edu.cn
  orcid: https://orcid.org/0000-0001-8567-2997
repository: https://glycoverse.r-universe.dev
commit: d10d13d69b9f8b3cb93d8fd4fe5b4623497c1572
url: https://glycoverse.github.io/glyclean/
date-released: '2026-05-18'
contact:
- family-names: Fu
  given-names: Bin
  email: 23110220018@m.fudan.edu.cn
  orcid: https://orcid.org/0000-0001-8567-2997