NEWS
glydb 0.5.0
New features
- Add
glytoucan_to_struc() to fetch GlyTouCan accessions from the GlyGen API and parse returned IUPAC strings into glycan structures (#7).
Minor improvements and bug fixes
- Update internal data to use the GlyTouCan v2.11.1 release.
glydb 0.4.1
Minor improvements and bug fixes
- Update documentation to correctly reflect data version.
glydb 0.4.0
New features
- Add a
mono_range parameter to glydb_compositions() and glydb_structures().
glydb_compositions() and glydb_structures() now return a vector with a confidence attribute, readily used by the glyanno package to rank the results.glydb_data now has new confidence column.
glydb 0.3.3
Minor improvements and bug fixes
- Update internal data to use GlyGen Datasets v2.10.1.
glydb 0.3.2
Minor improvements and bug fixes
glydb 0.3.1
Minor improvements and bug fixes
- glydb now depends on CRAN version of glyrepr 0.9.0.
glydb 0.3.0
New features
- Add a
glycan_type column to glydb_data. Can be "N", "O-GalNAc", "O-GlcNAc", "O-Man", "O-Fuc", "O-Glc".
- Add a
glycan_type parameter to glydb_compositions() and glydb_structures().
glydb 0.2.1
Minor improvements and bug fixes
- Fix the bug that
glydb_species() fails when the package is used via glydb::fun and not attached with library(glydb).
glydb 0.2.0
Breaking changes
- Remove the
topology_glycans dataset.
- Rename the
fully_determined_glycans dataset to glydb_data.
New features
- Add
glydb_species() to get the species names from glydb_data.
- Add
glydb_compositions() to get the glycan compositions from glydb_data with different monosaccharide types.
- Add
glydb_structures() to get the glycan structures from glydb_data with different structure levels.
Minor improvements and bug fixes
- Update the documentation of
glydb_data to explain the duplicate glycan structures in the dataset.
glydb 0.1.1
Minor improvements and bug fixes
- Update the
topology_glycans dataset to remove some duplicates.
glydb 0.1.0