Package: glydet 0.13.0

Bin Fu

glydet: Describe Glycosylation Structural Properties in a Site Specific Manner

Calculate and analyze glycosylation derived traits for site-specific glycoproteomics data. Derived traits are summary features that aggregate individual glycan abundances into biologically meaningful groups (e.g., galactosylation, sialylation, fucosylation, branching). This package provides functions to compute well-established derived traits from the literature, and features a domain-specific language for defining custom derived traits tailored to specific research needs.

Authors:Bin Fu [aut, cre]

glydet_0.13.0.tar.gz
glydet_0.13.0.zip(r-4.7-any)glydet_0.13.0.zip(r-4.6-any)glydet_0.13.0.zip(r-4.5-any)
glydet_0.13.0.tgz(r-4.6-any)glydet_0.13.0.tgz(r-4.5-any)
glydet_0.13.0.tar.gz(r-4.7-any)glydet_0.13.0.tar.gz(r-4.6-any)
glydet_0.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
glydet/json (API)

# Install 'glydet' in R:
install.packages('glydet', repos = c('https://glycoverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/glycoverse/glydet/issues

Pkgdown/docs site:https://glycoverse.github.io

On CRAN:

Conda:

derived-traitsglycoinformaticsglycomicsglycoproteomicsglycoverse

5.01 score 1 packages 6 scripts 31 exports 59 dependencies

Last updated from:1d7c33edbb (on v0.13.0). Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK166
source / vignettesOK306
linux-releaseOK204
macos-releaseOK117
macos-oldrelOK156
windows-develOK151
windows-releaseOK178
windows-oldrelOK153
wasm-releaseOK135

Exports:add_meta_propertiesall_mp_fnsall_traitsbasic_traitsderive_traitsexplain_traitexplain_traitsget_meta_propertieshas_bisectingmake_traitmake_traitsn_antennaen_arm_fucn_core_fucn_fucn_galn_glycan_typen_mann_sian_terminal_galpropquantify_motifsratiototaltraits_basictraits_clerc_2018traits_detailedtraits_fu_2026traits_li_2025wmeanwsum

Dependencies:abindbackportsBHBiobaseBiocGenericscachemcheckmateclicpp11DelayedArraydplyrfarverfastmapfsgenericsGenomicRangesggplot2glueglydrawglymotifglyparseglyreprgtableigraphIRangesisobandlabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisepillarpkgconfigpngpurrrR6RColorBrewerRcpprlangrstackdequeS4ArraysS4VectorsS7scalesSeqinfoSparseArraystringistringrSummarizedExperimenttibbletidyselectutf8vctrsviridisLitewithrXVector

Defining Custom Traits
Custom Traits | Trait Factories | prop() | ratio() | wmean() | total() | wsum() | Using Custom Traits | Validating Trait Definitions | Custom Meta-Properties | Defining Custom Meta-Properties with Functions | Defining Custom Meta-Properties with Columns | Using make_trait() | Exercise Solutions
Rendered fromcustom-traits.Rmdusingknitr::rmarkdown

Last update: 2026-07-16
Started: 2025-09-09

Get Started with glydet
Important Notes Before You Start | Prerequisites | Data Types | Your First Analysis | Site-Specific Derived Traits in Glycoproteomics | Understanding Meta-Properties | get_meta_properties() | add_meta_properties() | Meta-Property Functions | Working with Structural Ambiguity | Generic vs. Specific Monosaccharides | Handling Detailed Structures | Extending Functionality | What's Next?
Rendered fromglydet.Rmdusingknitr::rmarkdown

Last update: 2026-07-16
Started: 2025-09-08

Quantifying Glycan Motifs
What is motif quantification? | The quantify_motifs() function | Absolute vs. relative motif quantification | Absolute motif quantification | Relative motif quantification | Choosing the right approach | Connection to derived traits
Rendered fromquantify-motifs.Rmdusingknitr::rmarkdown

Last update: 2026-07-16
Started: 2025-10-06