Package: glyexp
Title: Glycoproteomics and Glycomics Experiments
Version: 0.14.1
Authors@R: 
    person("Bin", "Fu", , "23110220018@m.fudan.edu.cn", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-8567-2997"))
Description: Provides a tidy data framework for managing
        glycoproteomics and glycomics experimental data. The core
        feature is the 'experiment()' class, which serves as a unified
        data container integrating expression matrices, variable
        information (proteins, peptides, glycan compositions, etc.),
        and sample metadata (groups, batches, clinical variables,
        etc.). The package enforces data consistency, validates column
        types according to experiment types (glycomics,
        glycoproteomics, traitomics, traitproteomics), and provides
        dplyr-style data manipulation functions (filter, mutate,
        select, arrange, slice, join) for seamless data wrangling. As
        the data core of the 'glycoverse' ecosystem, it provides a
        consistent interface that other packages can reliably extract
        information from, enabling smooth data exchange and analysis
        workflows.
License: MIT + file LICENSE
Suggests: conflicted, knitr, rmarkdown, testthat (>= 3.0.0), S4Vectors,
        SummarizedExperiment
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://glycoverse.github.io/glyexp/,
        https://github.com/glycoverse/glyexp
Imports: checkmate, cli, dplyr, glue, glyrepr (>= 0.10.0), purrr,
        rlang, stringr, tibble, tidyr, tidyselect, vctrs
VignetteBuilder: knitr
Depends: R (>= 4.1)
LazyData: true
BugReports: https://github.com/glycoverse/glyexp/issues
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://glycoverse.r-universe.dev
Date/Publication: 2026-03-29 02:11:08 UTC
RemoteUrl: https://github.com/glycoverse/glyexp
RemoteRef: v0.14.1
RemoteSha: 3e3506a9b85487b546cf43aca084efc79ed6175b
NeedsCompilation: no
Packaged: 2026-06-19 09:21:51 UTC; root
Author: Bin Fu [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-8567-2997>)
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>