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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "glyfun" in publications use:'
type: software
license: MIT
title: 'glyfun: Glycan-Centric Functional Enrichment Analysis'
version: 0.1.0
doi: 10.32614/CRAN.package.glyfun
abstract: Provides functional enrichment analysis for glycoproteomics data, including
  both protein-centric and glycan-centric approaches. The 'enrich_xxx()' functions
  answer "Which functions are enriched for proteins with dysregulated glycosylation?"
  (traditional protein-level enrichment), while 'enrich_gc_xxx()' functions answer
  "Which functions are enriched for dysregulated glycan traits?" (glycan-centric,
  linking glycan traits like core-fucosylation with functional annotations). Supports
  both Over Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA)
  with common databases including GO, KEGG, Reactome, WikiPathways, DO (Disease Ontology),
  and NCG (Network of Cancer Genes). Integrates seamlessly with 'glydet' (for site-specific
  derived traits) and 'glystats' (for differential expression analysis).
authors:
- family-names: Fu
  given-names: Bin
  email: 23110220018@m.fudan.edu.cn
  orcid: https://orcid.org/0000-0001-8567-2997
repository: https://glycoverse.r-universe.dev
commit: 307b4163e143da99f14d5bd025d305d007a03f58
url: https://glycoverse.github.io/glyfun/
date-released: '2026-04-25'
contact:
- family-names: Fu
  given-names: Bin
  email: 23110220018@m.fudan.edu.cn
  orcid: https://orcid.org/0000-0001-8567-2997