Package: glymotif
Title: Extract Glycan Motifs from Glycan Structures
Version: 0.16.1
Authors@R: 
    person("Bin", "Fu", , "23110220018@m.fudan.edu.cn", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-8567-2997"))
Description: Provides comprehensive tools for glycan motif analysis and
        detection in glycobioinformatics research. The package enables
        users to identify, count, and match glycan motifs (recurring
        substructures) within complex glycan structures using advanced
        subgraph isomorphism algorithms. It includes a curated database
        of known motifs from the GlycoMotif database, supports both
        concrete and generic monosaccharide matching, and offers
        flexible alignment options (core, terminal, or anywhere). Key
        functionalities include motif presence detection, occurrence
        counting, detailed node-to-node mapping, and batch analysis of
        multiple glycans against multiple motifs. The package
        seamlessly integrates with the glycoverse ecosystem,
        particularly 'glyrepr' and 'glyparse', making it essential for
        structural glycomics analysis, biomarker discovery, and
        understanding glycan-mediated biological processes.
License: MIT + file LICENSE
Suggests: testthat (>= 3.0.0), patrick, knitr, rmarkdown, glyexp (>=
        0.12.4), glyclean (>= 0.12.0), glyread (>= 0.8.4)
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
URL: https://glycoverse.github.io/glymotif/,
        https://github.com/glycoverse/glymotif
Imports: cli, glyrepr (>= 0.12.0), glyparse (>= 0.6.0), glydraw (>=
        0.4.0), igraph, purrr, rlang, stringr, checkmate, dplyr,
        tibble, memoise, vctrs, lifecycle
Depends: R (>= 4.1)
VignetteBuilder: knitr
BugReports: https://github.com/glycoverse/glymotif/issues
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev
Repository: https://glycoverse.r-universe.dev
Date/Publication: 2026-06-24 05:10:38 UTC
RemoteUrl: https://github.com/glycoverse/glymotif
RemoteRef: v0.16.1
RemoteSha: 4adbc35143c9e6b485b1a4bddc455b63de4aa48a
NeedsCompilation: no
Packaged: 2026-07-02 05:20:12 UTC; root
Author: Bin Fu [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-8567-2997>)
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>