Package: glyparse 1.0.1

Bin Fu

glyparse: Parsing Glycan Structure Text Representations

Provides functions to parse glycan structure text representations into 'glyrepr' glycan structures. Currently, it supports StrucGP-style, pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, IUPAC-compact, WURCS, LINUCS, Linear Code, GlycoCT, KCF, and GlycoWorkbench formats. It also provides an automatic parser to detect the format and parse the structure string.

Authors:Bin Fu [aut, cre, cph]

glyparse_1.0.1.tar.gz
glyparse_1.0.1.zip(r-4.7-x86_64)glyparse_1.0.1.zip(r-4.7-arm64)glyparse_1.0.1.zip(r-4.6-x86_64)glyparse_1.0.1.zip(r-4.6-arm64)glyparse_1.0.1.zip(r-4.5-x86_64)
glyparse_1.0.1.tgz(r-4.6-x86_64)glyparse_1.0.1.tgz(r-4.6-arm64)glyparse_1.0.1.tgz(r-4.5-x86_64)glyparse_1.0.1.tgz(r-4.5-arm64)
glyparse_1.0.1.tar.gz(r-4.7-arm64)glyparse_1.0.1.tar.gz(r-4.7-x86_64)glyparse_1.0.1.tar.gz(r-4.6-arm64)glyparse_1.0.1.tar.gz(r-4.6-x86_64)
glyparse_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
glyparse/json (API)

# Install 'glyparse' in R:

install.packages('glyparse', repos = c('https://glycoverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/glycoverse/glyparse/issues

Pkgdown/docs site:https://glycoverse.github.io

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

glycan-structures glycans glycoinformatics glycoverse parser cpp

6.99 score 8 packages 37 scripts 387 downloads 14 exports 27 dependencies

Last updated from:5516c67302 (on v1.0.1). Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	188
linux-devel-x86_64	OK	199
source / vignettes	OK	348
linux-release-arm64	OK	209
linux-release-x86_64	OK	224
macos-release-arm64	OK	170
macos-release-x86_64	OK	260
macos-oldrel-arm64	OK	135
macos-oldrel-x86_64	OK	353
windows-devel-arm64	OK	263
windows-devel-x86_64	OK	197
windows-release-arm64	OK	265
windows-release-x86_64	OK	213
windows-oldrel-x86_64	OK	216
wasm-release	OK	138

Exports:auto_parse parse_glycam_iupac parse_glycoct parse_gwb parse_iupac_compact parse_iupac_condensed parse_iupac_extended parse_iupac_short parse_kcf parse_linear_code parse_linucs parse_pglyco_struc parse_strucgp_struc parse_wurcs

Dependencies:backports checkmate cli cpp11 dplyr generics glue glyrepr igraph lattice lifecycle magrittr Matrix pillar pkgconfig purrr R6 Rcpp rlang rstackdeque stringi stringr tibble tidyselect utf8 vctrs withr

Getting Started with glyparse

Rendered fromglyparse.Rmdusingknitr::rmarkdown

Last update: 2026-08-26
Started: 2025-06-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Automatic Structure Parsing	auto_parse
Native Parsing Options	glyparse_options
Parse GlyCAM IUPAC Structures	parse_glycam_iupac
Parse GlycoCT Structures	parse_glycoct
Parse GlycoWorkbench Structures	parse_gwb
Parse IUPAC-compact Structures	parse_iupac_compact
Parse IUPAC-condensed Structures	parse_iupac_condensed
Parse IUPAC-extended Structures	parse_iupac_extended
Parse IUPAC-short Structures	parse_iupac_short
Parse KCF Structures	parse_kcf
Parse Linear Code Structures	parse_linear_code
Parse LINUCS Structures	parse_linucs
Parse pGlyco Structures	parse_pglyco_struc
Parse StrucGP Structures	parse_strucgp_struc
Parse WURCS Structures	parse_wurcs