Package: glyread
Title: Read and process glycomics and glycoproteomics data
Version: 0.12.1
Authors@R: 
    person("Bin", "Fu", , "23110220018@m.fudan.edu.cn", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-8567-2997"))
Description: Provides a unified interface for reading and processing
        quantification results from various glycomics and
        glycoproteomics software tools, including Byonic (ByoLogic,
        pGlycoQuant), StrucGP, pGlyco3 (pGlycoQuant), Glyco-Decipher,
        GlyHunter, and MSFragger. The package standardizes raw data
        from different sources, performs peptide-spectrum match (PSM)
        aggregation, parses glycan compositions and structures, and
        converts the data into a standardized 'GlycomicSE' and
        'GlycoproteomicSE' objects from the 'glyexp' package for
        downstream analysis within the glycoverse ecosystem.
License: MIT + file LICENSE
Suggests: knitr, rmarkdown, SummarizedExperiment, testthat (>= 3.0.0),
        withr
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://glycoverse.github.io/glyread/
Imports: AnnotationDbi, checkmate, cli, dplyr, fs, glyexp (>= 0.16.0),
        glyparse (>= 0.5.3), glyrepr (>= 0.7.4), janitor, magrittr,
        purrr, readr, readxl, rlang, S4Vectors, stringr, tibble, tidyr,
        tidyselect
Depends: R (>= 4.1)
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://glycoverse.r-universe.dev
Date/Publication: 2026-07-16 10:59:51 UTC
RemoteUrl: https://github.com/glycoverse/glyread
RemoteRef: v0.12.1
RemoteSha: 557972b2326f54fac362e2a6a9e9d9d205b87b9d
NeedsCompilation: no
Packaged: 2026-07-21 05:14:51 UTC; root
Author: Bin Fu [aut, cre] (ORCID: <https://orcid.org/0000-0001-8567-2997>)
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>