Package: glystats
Title: Statistical Analysis of Glycoproteomics and Glycomics Data
Version: 0.13.0
Authors@R: 
    person("Bin", "Fu", , "23110220018@m.fudan.edu.cn", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-8567-2997"))
Description: Provides a unified toolbox for bioinformatics analyses of
        glycomics and glycoproteomics data. Implemented methods include
        differential testing (independent and paired t-tests, Wilcoxon
        tests, one-way and repeated-measures ANOVA, Kruskal–Wallis and
        Friedman tests), formula-based moderated linear models,
        correlated-set Hotelling tests, multivariate modeling and
        visualization (PCA, t-SNE, UMAP), supervised learning (PLS-DA,
        OPLS-DA), clustering (k-means, hierarchical), survival modeling
        (Cox proportional hazards), correlation analysis, and ROC/AUC
        evaluation. All user-facing functions follow the gly_*() naming
        convention to facilitate auto-completion in RStudio. Analysis
        functions accept 'glyexp' 'GlycomicSE', 'GlycoproteomicSE', and
        'SummarizedExperiment' objects as their unified data interface.
License: MIT + file LICENSE
Suggests: testthat (>= 3.0.0), FSA, emmeans, ropls, Rtsne, uwot, pROC,
        ggdendro, Hmisc, limma, knitr, rmarkdown, glyclean (>= 0.12.0),
        glyread (>= 0.8.4)
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://glycoverse.github.io/glystats/
Imports: tibble, glyexp (>= 0.16.0), rlang, tidyr, dplyr, tidyselect,
        magrittr, janitor, checkmate, cli, stats, broom, purrr,
        stringr, survival, glyrepr (>= 0.9.0), SummarizedExperiment,
        S4Vectors, methods
Depends: R (>= 4.1)
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://glycoverse.r-universe.dev
Date/Publication: 2026-10-16 03:43:40 UTC
RemoteUrl: https://github.com/glycoverse/glystats
RemoteRef: v0.13.0
RemoteSha: 683d181aee566eb58caa90b46f83f3de7dbe75c6
NeedsCompilation: no
Packaged: 2026-10-16 08:29:57 UTC; root
Author: Bin Fu [aut, cre] (ORCID: <https://orcid.org/0000-0001-8567-2997>)
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>