Package: glystats
Title: Statistical Analysis of Glycoproteomics and Glycomics Data
Version: 0.10.1
Authors@R: 
    person("Bin", "Fu", , "23110220018@m.fudan.edu.cn", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-8567-2997"))
Description: Provides a unified toolbox for bioinformatics analyses of
        glycomics and glycoproteomics data. Implemented methods include
        differential testing (t-test, Wilcoxon rank-sum test, ANOVA,
        Kruskal–Wallis), multivariate modeling and visualization (PCA,
        t-SNE, UMAP), supervised learning (PLS-DA, OPLS-DA), clustering
        (k-means, hierarchical, consensus clustering), network analysis
        (weighted gene co-expression network analysis, WGCNA), survival
        modeling (Cox proportional hazards), enrichment analysis,
        correlation analysis, and ROC/AUC evaluation. All user-facing
        functions follow the gly_*() naming convention to facilitate
        auto-completion in RStudio. The package is designed to work
        seamlessly with 'glyexp' and tidy data workflows.
License: MIT + file LICENSE
Suggests: testthat (>= 3.0.0), FSA, emmeans, ropls, mockery, Rtsne,
        org.Hs.eg.db, uwot, pROC, clusterProfiler, ReactomePA, DOSE,
        ggdendro, Hmisc, limma, WGCNA, ConsensusClusterPlus, knitr,
        rmarkdown, glyclean (>= 0.12.0), glyread (>= 0.8.4)
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://glycoverse.github.io/glystats/
Imports: tibble, glyexp (>= 0.12.3), rlang, lifecycle, tidyr, dplyr,
        tidyselect, magrittr, janitor, checkmate, cli, stats, broom,
        purrr, stringr, withr, survival, glyrepr (>= 0.9.0)
Depends: R (>= 4.1)
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://glycoverse.r-universe.dev
Date/Publication: 2026-05-20 02:31:07 UTC
RemoteUrl: https://github.com/glycoverse/glystats
RemoteRef: v0.10.1
RemoteSha: a2bbb687a5d870c5609e4763ff5ffca9bd133ff8
NeedsCompilation: no
Packaged: 2026-06-19 09:24:54 UTC; root
Author: Bin Fu [aut, cre] (ORCID: <https://orcid.org/0000-0001-8567-2997>)
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>