Package: glyvis 0.7.2

Bin Fu

glyvis: Fast Visualization For Glycoverse

Provides a unified interface for visualizing glycomics data within the 'glycoverse' ecosystem. Implements 'autoplot()' methods for various data structures including statistical results from 'glystats', experimental data from 'glyexp', and glycan structures from 'glyrepr'. Designed for rapid data exploration and quality assessment rather than publication-quality figure generation.

Authors:Bin Fu [aut, cre]

glyvis_0.7.2.tar.gz
glyvis_0.7.2.zip(r-4.7-any)glyvis_0.7.2.zip(r-4.6-any)glyvis_0.7.2.zip(r-4.5-any)
glyvis_0.7.2.tgz(r-4.6-any)glyvis_0.7.2.tgz(r-4.5-any)
glyvis_0.7.2.tar.gz(r-4.7-any)glyvis_0.7.2.tar.gz(r-4.6-any)
glyvis_0.7.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
glyvis/json (API)

# Install 'glyvis' in R:

install.packages('glyvis', repos = c('https://glycoverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/glycoverse/glyvis/issues

Pkgdown/docs site:https://glycoverse.github.io

On CRAN:

4.29 score 1 packages 12 exports 59 dependencies

Last updated from:77c3f45ec0 (on v0.7.2). Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	230
source / vignettes	OK	280
linux-release	OK	223
macos-release	OK	144
macos-oldrel	OK	143
windows-devel	OK	211
windows-release	OK	116
windows-oldrel	OK	178
wasm-release	OK	183

Exports:autoplot plot_boxplot plot_corrplot plot_heatmap plot_logo plot_oplsda plot_pca plot_plsda plot_roc plot_tsne plot_umap plot_volcano

Dependencies:abind backports Biobase BiocGenerics checkmate cli cpp11 DelayedArray digest dplyr farver fs generics GenomicRanges ggplot2 ggplotify ggrepel glue glyexp glyrepr gridGraphics gtable igraph IRanges isoband labeling lattice lifecycle magrittr Matrix MatrixGenerics matrixStats pillar pkgconfig purrr R6 rappdirs RColorBrewer Rcpp rlang rstackdeque S4Arrays S4Vectors S7 scales Seqinfo SparseArray stringi stringr SummarizedExperiment tibble tidyr tidyselect utf8 vctrs viridisLite withr XVector yulab.utils

Get Started with glyvis

The Dual Nature of glyvis | A Philosophy on Aesthetics

Rendered fromglyvis.Rmdusingknitr::rmarkdown

Last update: 2025-09-18
Started: 2025-09-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Plots for Glycoverse Data Containers	autoplot.glyexp_experiment autoplot.SummarizedExperiment
Plots for Multi-Group Differential Expression Analysis (DEA)	autoplot.glystats_anova_res autoplot.glystats_kruskal_res
Plots for Correlation Analysis	autoplot.glystats_cor_res
Plots for Cox Proportional Hazards Model	autoplot.glystats_cox_res
Plots for Hierarchical Clustering	autoplot.glystats_hclust_res
Plots for Limma Result	autoplot.glystats_limma_res
Plots for OPLS-DA	autoplot.glystats_oplsda_res
Plots for Principal Component Analysis (PCA)	autoplot.glystats_pca_res
Plots for PLS-DA	autoplot.glystats_plsda_res
Plots for ROC Analysis	autoplot.glystats_roc_res
Plots for t-SNE	autoplot.glystats_tsne_res
Plots for 2-Group Differential Expression Analysis (DEA)	autoplot.glystats_ttest_res autoplot.glystats_wilcox_res
Plots for UMAP	autoplot.glystats_umap_res
Boxplot	plot_boxplot plot_boxplot.glyexp_experiment plot_boxplot.SummarizedExperiment
Correlation Plot	plot_corrplot plot_corrplot.glyexp_experiment plot_corrplot.glystats_cor_res plot_corrplot.SummarizedExperiment
Heatmap	plot_heatmap plot_heatmap.glyexp_experiment plot_heatmap.SummarizedExperiment
Logo Plot	plot_logo plot_logo.GlycoproteomicSE plot_logo.glyexp_experiment
OPLS-DA Plot	plot_oplsda plot_oplsda.glyexp_experiment plot_oplsda.glystats_oplsda_res plot_oplsda.SummarizedExperiment
PCA Plot	plot_pca plot_pca.glyexp_experiment plot_pca.glystats_pca_res plot_pca.SummarizedExperiment
PLS-DA Plot	plot_plsda plot_plsda.glyexp_experiment plot_plsda.glystats_plsda_res plot_plsda.SummarizedExperiment
ROC plot	plot_roc plot_roc.glyexp_experiment plot_roc.glystats_roc_res plot_roc.SummarizedExperiment
t-SNE Plot	plot_tsne plot_tsne.glyexp_experiment plot_tsne.glystats_tsne_res plot_tsne.SummarizedExperiment
UMAP Plot	plot_umap plot_umap.glyexp_experiment plot_umap.glystats_umap_res plot_umap.SummarizedExperiment
Volcano Plot	plot_volcano plot_volcano.glyexp_experiment plot_volcano.glystats_limma_res plot_volcano.glystats_ttest_res plot_volcano.glystats_wilcox_res plot_volcano.SummarizedExperiment