Package: glyvis 0.6.0

Bin Fu

glyvis: Fast Visualization For Glycoverse

Provides a unified interface for visualizing glycomics data within the 'glycoverse' ecosystem. Implements 'autoplot()' methods for various data structures including statistical results from 'glystats', experimental data from 'glyexp', and glycan structures from 'glyrepr'. Designed for rapid data exploration and quality assessment rather than publication-quality figure generation.

Authors:Bin Fu [aut, cre]

glyvis_0.6.0.tar.gz
glyvis_0.6.0.zip(r-4.7)glyvis_0.6.0.zip(r-4.6)glyvis_0.6.0.zip(r-4.5)
glyvis_0.6.0.tgz(r-4.6-any)glyvis_0.6.0.tgz(r-4.5-any)
glyvis_0.6.0.tar.gz(r-4.7-any)glyvis_0.6.0.tar.gz(r-4.6-any)
glyvis_0.6.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
glyvis/json (API)

# Install 'glyvis' in R:

install.packages('glyvis', repos = c('https://glycoverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/glycoverse/glyvis/issues

Pkgdown/docs site:https://glycoverse.github.io

On CRAN:

4.50 score 1 packages 13 exports 51 dependencies

Last updated from:f6dadab709 (on v0.6.0). Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	237
source / vignettes	OK	313
linux-release-x86_64	OK	241
macos-release-arm64	OK	144
macos-oldrel-arm64	OK	140
windows-devel	OK	195
windows-release	OK	195
windows-oldrel	OK	193
wasm-release	OK	243

Exports:autoplot plot_boxplot plot_corrplot plot_enrich plot_heatmap plot_logo plot_oplsda plot_pca plot_plsda plot_roc plot_tsne plot_umap plot_volcano

Dependencies:backports checkmate cli codetools cpp11 digest dplyr farver fs furrr future generics ggplot2 ggplotify ggrepel globals glue glyexp glyrepr gridGraphics gtable igraph isoband labeling lattice lifecycle listenv magrittr Matrix parallelly pillar pkgconfig purrr R6 rappdirs RColorBrewer Rcpp rlang rstackdeque S7 scales stringi stringr tibble tidyr tidyselect utf8 vctrs viridisLite withr yulab.utils

Get Started with glyvis

The Dual Nature of glyvis | A Philosophy on Aesthetics

Rendered fromglyvis.Rmdusingknitr::rmarkdown

Last update: 2025-09-18
Started: 2025-09-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Plots for Experiments	autoplot.glyexp_experiment
Plots for Multi-Group Differential Expression Analysis (DEA)	autoplot.glystats_anova_res autoplot.glystats_kruskal_res
Plots for Correlation Analysis	autoplot.glystats_cor_res
Plots for Cox Proportional Hazards Model	autoplot.glystats_cox_res
Plots for Enrichment Analysis	autoplot.glystats_go_ora_res autoplot.glystats_kegg_ora_res autoplot.glystats_reactome_ora_res
Plots for Hierarchical Clustering	autoplot.glystats_hclust_res
Plots for Limma Result	autoplot.glystats_limma_res
Plots for OPLS-DA	autoplot.glystats_oplsda_res
Plots for Principal Component Analysis (PCA)	autoplot.glystats_pca_res
Plots for PLS-DA	autoplot.glystats_plsda_res
Plots for ROC Analysis	autoplot.glystats_roc_res
Plots for t-SNE	autoplot.glystats_tsne_res
Plots for 2-Group Differential Expression Analysis (DEA)	autoplot.glystats_ttest_res autoplot.glystats_wilcox_res
Plots for UMAP	autoplot.glystats_umap_res
Boxplot	plot_boxplot plot_boxplot.glyexp_experiment
Correlation Plot	plot_corrplot plot_corrplot.glyexp_experiment plot_corrplot.glystats_cor_res
Plot Enrichment Analysis Results	plot_enrich plot_enrich.glyexp_experiment plot_enrich.glystats_go_ora_res plot_enrich.glystats_kegg_ora_res plot_enrich.glystats_reactome_ora_res
Heatmap	plot_heatmap plot_heatmap.glyexp_experiment
Logo Plot	plot_logo plot_logo.glyexp_experiment
OPLS-DA Plot	plot_oplsda plot_oplsda.glyexp_experiment plot_oplsda.glystats_oplsda_res
PCA Plot	plot_pca plot_pca.glyexp_experiment plot_pca.glystats_pca_res
PLS-DA Plot	plot_plsda plot_plsda.glyexp_experiment plot_plsda.glystats_plsda_res
ROC plot	plot_roc plot_roc.glyexp_experiment plot_roc.glystats_roc_res
t-SNE Plot	plot_tsne plot_tsne.glyexp_experiment plot_tsne.glystats_tsne_res
UMAP Plot	plot_umap plot_umap.glyexp_experiment plot_umap.glystats_umap_res
Volcano Plot	plot_volcano plot_volcano.glyexp_experiment plot_volcano.glystats_limma_res plot_volcano.glystats_ttest_res plot_volcano.glystats_wilcox_res